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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68567899_68569535_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68567899 - 68569535
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TATTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTTTTAAAG
Flanking Amino Acid:
IEKEDGLDGETIFMYMFLAG
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
69.6
42.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
33
-1.9
3.1
38.9
39.9
Minor BPS
68.2
0.43
1.4
70.46
36.6

Associated Gene:

Gene:
SSR1
Ensembl Gene ID:
ENSAPLG00000004473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004617
68563666 - 68578113
14448
ENSAPLT00000039489
68563213 - 68583161
19949
ENSAPLT00000026899
68563666 - 68583060
19395
ENSAPLT00000026695
68563213 - 68583325
20113
ENSAPLT00000017578
68559895 - 68573079
13185