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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68569615_68570445_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68569615 - 68570445
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCTCTTGCATT
Flanking Amino Acid:
GLHQLLESRKRKRPVQKVEM
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
80.9
0.7
0.9
77.3
35.9
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
54
0.21
1.9
76.06
41.4

Associated Gene:

Gene:
SSR1
Ensembl Gene ID:
ENSAPLG00000004473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004617
68563666 - 68578113
14448
ENSAPLT00000039489
68563213 - 68583161
19949
ENSAPLT00000026899
68563666 - 68583060
19395
ENSAPLT00000026695
68563213 - 68583325
20113
ENSAPLT00000017578
68559895 - 68573079
13185