Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68571090_68573011_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

68571090 - 68573011

Intron Length:

1922

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

TAGCAATTAACA

Flanking Amino Acid:

TLNQIMQSRRDKASPRRLPR

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

70.9

36.4

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

91.4

0.93

0.6

85.5

29.2

Minor 5ss

24.6

-2.9

28.8

43.6

Minor BPS

52.8

0.08

1.8

64.93

40.4

Associated Gene:

Gene:

SSR1

Ensembl Gene ID:

ENSAPLG00000004473

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039489

68563213 - 68583161

19949

ENSAPLT00000026899

68563666 - 68583060

19395

ENSAPLT00000004617

68563666 - 68578113

14448