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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68587524_68590746_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68587524 - 68590746
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GTGACCTTACGG
Flanking Amino Acid:
DLTRHMRSHTGERPYKCQTC
Intron Amino Acid Position:
1422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
78.9
0.65
0.8
73.7
30.9
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
47.3
-0.3
2
52.58
47.6

Associated Gene:

Gene:
RREB1
Ensembl Gene ID:
ENSAPLG00000004726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004887
68587003 - 68649317
62315