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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68591494_68605861_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68591494 - 68605861
Intron Length:
14368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TCCCACTGAAAG
Flanking Amino Acid:
SLQRHMLTHTDNQSDAETPT
Intron Amino Acid Position:
1173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
62
0.3
1
53
34.1
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
45.6
-0.4
1.8
48.24
44.4

Associated Gene:

Gene:
RREB1
Ensembl Gene ID:
ENSAPLG00000004726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004887
68587003 - 68649317
62315