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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68625064_68642856_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68625064 - 68642856
Intron Length:
17793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TGCCCGCTGACG
Flanking Amino Acid:
QSFTTNGNMHRHMKIHEKDP
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
69.8
0.45
0.9
67.8
32.2
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
42.4
-0.7
2.3
49.82
43.9

Associated Gene:

Gene:
RREB1
Ensembl Gene ID:
ENSAPLG00000004726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004887
68587003 - 68649317
62315