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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68643021_68644420_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68643021 - 68644420
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAAA
5'SS Class:
major
3'SS Sequence:
TTGCTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ATTCAATGAAAA
Flanking Amino Acid:
QHQLTMHIRQHNTDTGGTDH
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
67.6
39.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
37
-1.5
3.2
48.2
47.5
Minor BPS
45.4
-0.3
1.9
60.77
37.6

Associated Gene:

Gene:
RREB1
Ensembl Gene ID:
ENSAPLG00000004726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004887
68587003 - 68649317
62315