About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68644511_68649203_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68644511 - 68649203
Intron Length:
4693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCTGATTT
Flanking Amino Acid:
APNRIGRRNQETKEEKSSYT
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.6
0.71
0.9
75.8
38.1
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
50.9
0.11
1.7
67.65
44

Associated Gene:

Gene:
RREB1
Ensembl Gene ID:
ENSAPLG00000004726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004887
68587003 - 68649317
62315