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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68715240_68719741_R

Intron Information:

Intron Rank:
143722
Intron Class:
major
Intron Phase:
Intron Coordinates:
68715240 - 68719741
Intron Length:
4502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.9
78.2
35.2
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
60.3
0.18
1.8
69.97
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037993
68714697 - 68724670
9974