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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68719914_68724480_R

Intron Information:

Intron Rank:
143721
Intron Class:
major
Intron Phase:
Intron Coordinates:
68719914 - 68724480
Intron Length:
4567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTGTTATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
74.8
0.56
0.9
69.8
40.4
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
47.7
-0
1.9
66.89
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020812
68717619 - 68724670
7052
ENSAPLT00000037993
68714697 - 68724670
9974