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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68825925_68828446_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68825925 - 68828446
Intron Length:
2522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTGTTTCATA
Flanking Amino Acid:
VTLGIKEIPQGDYTVSARLT
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82
0.72
0.9
77.3
36.1
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
49.5
-0
2.1
67.25
40.1

Associated Gene:

Gene:
LY86
Ensembl Gene ID:
ENSAPLG00000030505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028019
68825829 - 68851580
25752