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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68828500_68835131_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68828500 - 68835131
Intron Length:
6632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TGGTGTCTAACC
Flanking Amino Acid:
QLIFCGKKKGEHLYYEGPVT
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
76.8
34.6
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
48.9
-0.1
2.1
63.47
42.2

Associated Gene:

Gene:
LY86
Ensembl Gene ID:
ENSAPLG00000030505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028019
68825829 - 68851580
25752