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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68835261_68836367_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68835261 - 68836367
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAACA
Flanking Amino Acid:
TFNVRAAMVLRHSIKELYIK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.1
0.68
0.8
77
31.6
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
79.8
0.93
1.2
88.1
28.6

Associated Gene:

Gene:
LY86
Ensembl Gene ID:
ENSAPLG00000030505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028019
68825829 - 68851580
25752