About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68836455_68850720_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68836455 - 68850720
Intron Length:
14266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGATTC
5'SS Class:
major
3'SS Sequence:
TACTTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TACTTCCTGACA
Flanking Amino Acid:
DNLEIHYKSCDPQQDFAFSI
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
72.4
33.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
73.2
0.52
1
68.9
36.9
Minor 5ss
37.5
-1.4
3.2
51.6
45.1
Minor BPS
57.2
0.22
1.7
67.57
38.7

Associated Gene:

Gene:
LY86
Ensembl Gene ID:
ENSAPLG00000030505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028019
68825829 - 68851580
25752