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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68859496_68874711_F

Intron Information:

Intron Rank:
139818
Intron Class:
major
Intron Phase:
Intron Coordinates:
68859496 - 68874711
Intron Length:
15216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAGCATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1.2
82.3
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.7
0.74
0.7
76.9
31.8
Minor 5ss
40.2
-1.1
2.8
53
44.1
Minor BPS
59.3
0.37
1.5
71.55
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025173
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029856
68858740 - 68875458
16719