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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68950522_68956719_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68950522 - 68956719
Intron Length:
6198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
CATGCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTCTGCTCATTT
Flanking Amino Acid:
GLIPRGFNPKDYLCVVDIHM
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.4
0.53
0.9
65.9
35.5
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
45.2
-0.2
2.2
63.32
47.4

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789