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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68956909_68967703_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68956909 - 68967703
Intron Length:
10795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATAGAGT
Flanking Amino Acid:
TDQFWLEYLIGRYPQPNKGT
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.3
0.64
0.8
69.1
37
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
48.3
-0
2.2
74.52
42.3

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789