About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68974570_68980209_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68974570 - 68980209
Intron Length:
5640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTCTTTATCT
Flanking Amino Acid:
IKLRSWSYGQFEENILDACL
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.3
0.59
0.8
69.9
35.7
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
73.4
0.81
1.5
87.39
38.7

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789