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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68980318_68982529_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68980318 - 68982529
Intron Length:
2212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCAAT
5'SS Class:
major
3'SS Sequence:
TCTCTATCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTTCTCTATCT
Flanking Amino Acid:
IKICRVASAVINSRDDNGVI
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
72.3
38.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
79.8
0.67
0.7
78
29.5
Minor 5ss
47.3
-0.3
2.6
62.6
43.4
Minor BPS
64.7
0.54
1.9
88.58
36.4

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789