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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68982705_68988999_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68982705 - 68988999
Intron Length:
6295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTGTCCTCATTA
Flanking Amino Acid:
CWVFAGVFNTFLRCLGIPAR
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
73.9
0.59
1
81
30.2
Major PPT
73.8
0.54
0.9
68.2
37.6
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
58.7
0.27
1.8
71.46
41.2

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789