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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68995936_68996764_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68995936 - 68996764
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATATTG
5'SS Class:
major
3'SS Sequence:
GCGCCTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATAACTTTATCT
Flanking Amino Acid:
VDGTPQETSDGMYRCGPASV
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
67.1
38.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
60.4
0.23
1
51.5
38
Minor 5ss
41.8
-0.9
3.1
53.4
44.7
Minor BPS
61.3
0.43
1.6
76.13
40.3

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789