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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68996854_68997803_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68996854 - 68997803
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTGGTTTAATT
Flanking Amino Acid:
QFDAPFVFAEVNSDVVYSRR
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.2
0.73
0.8
77.6
36.3
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
64.2
0.53
1.8
82.98
39.3

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789