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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68998843_69002483_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68998843 - 69002483
Intron Length:
3641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
SFTVKLEPLMSSAFDVIITS
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
60.8
44
Major BPS
74.1
0.6
1
69
38.9
Major PPT
80.7
0.69
0.7
74.4
30.8
Minor 5ss
37.3
-1.4
3.5
51.7
45
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789