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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69002645_69005130_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69002645 - 69005130
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTCAT
5'SS Class:
major
3'SS Sequence:
CCTTGTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GGAGCTTTATCT
Flanking Amino Acid:
VLEIPSLRIKTQGEMVADKE
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
70.6
41.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77
0.61
1
72
38
Minor 5ss
47.5
-0.2
2.6
67.2
43.9
Minor BPS
52.1
0.15
1.7
66.21
44.2

Associated Gene:

Gene:
F13A1
Ensembl Gene ID:
ENSAPLG00000005008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005217
68945046 - 69009834
64789