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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69057286_69059688_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
69057286 - 69059688
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAGGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCCCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
GTGCCCTGTAGT
Flanking Amino Acid:
DDKRNLQTICAYWDDFHACT
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.4
69.7
43.7
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
78.7
0.65
0.7
72.7
25.4
Minor 5ss
45.7
-0.5
3.1
61.7
43.4
Minor BPS
45.6
-0.2
2.1
63.32
46.1

Associated Gene:

Gene:
NRN1
Ensembl Gene ID:
ENSAPLG00000021023
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037137
69053192 - 69060121
6930