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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6910564_6914550_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6910564 - 6914550
Intron Length:
3987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
CCTTTTTTAAAA
Flanking Amino Acid:
ALRRAESGTQLLARLEGRSS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
71.7
0.49
1.1
74.7
32.6
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
63.7
0.43
1.4
67.32
39.7

Associated Gene:

Gene:
XRCC2
Ensembl Gene ID:
ENSAPLG00000004781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004918
6904312 - 6914862
10551