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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69141073_69220386_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69141073 - 69220386
Intron Length:
79314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGGTTTATAT
Flanking Amino Acid:
VVLLDEFTHPKTKKVSHCYR
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.8
77.6
36.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
47.7
-0
2.1
72.46
44.8

Associated Gene:

Gene:
FARS2
Ensembl Gene ID:
ENSAPLG00000005643
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041869
69140314 - 69382368
242055
ENSAPLT00000027516
69140722 - 69347550
206829