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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69144632_69220386_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
69144632 - 69220386
Intron Length:
75755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTACCTGAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTACCT
Flanking Amino Acid:
VVLLDEFTHPNRRLVQRRLV
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
55.9
0.13
1.2
56.2
38.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
67.5
0.63
1.9
87.83
37.1

Associated Gene:

Gene:
FARS2
Ensembl Gene ID:
ENSAPLG00000005643
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037040
69144580 - 69382368
237789