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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69144669_69220386_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69144669 - 69220386
Intron Length:
75718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTGAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ACATCCCTATCT
Flanking Amino Acid:
VVLLDEFTHPNASLYSLHFI
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
71.3
0.48
1
68.9
35.7
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
53.4
0.18
2
72.19
44.2

Associated Gene:

Gene:
FARS2
Ensembl Gene ID:
ENSAPLG00000005643
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005837
69144635 - 69379043
234409