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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69160859_69220386_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69160859 - 69220386
Intron Length:
59528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CCCTCCTTATTT
Flanking Amino Acid:
VVLLDEFTHPKVCSRIFTQA
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
84.5
0.78
0.8
76.2
37.5
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
61.4
0.44
1.7
70.91
46.7

Associated Gene:

Gene:
FARS2
Ensembl Gene ID:
ENSAPLG00000005643
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017853
69140722 - 69379043
238322