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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69228665_69240215_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69228665 - 69240215
Intron Length:
11551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCCATAATC
Flanking Amino Acid:
PHICQKIKFQIASGNAYPDT
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.3
0.5
1
71.8
37.3
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
78
0.86
1.5
87.54
28.7

Associated Gene:

Gene:
FARS2
Ensembl Gene ID:
ENSAPLG00000005643
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025597
69228270 - 69379043
150774