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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6937447_6944905_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6937447 - 6944905
Intron Length:
7459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATCATTCATT
Flanking Amino Acid:
LPPCVIDGGTGYTKLGYAGN
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78
0.63
0.9
69.5
40.7
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
53.8
0.2
2
74.98
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004973
6937403 - 6962666
25264