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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6947989_6949348_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6947989 - 6949348
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACTTTTTCAATC
Flanking Amino Acid:
AEPEDHYFLMTEPPLNTPEN
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
57.5
0.22
1.5
63.92
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004973
6937403 - 6962666
25264