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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69484087_69484152_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
69484087 - 69484152
Intron Length:
66

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCGGAGCCC
5'SS Class:
weak_major
3'SS Sequence:
CCCCGCCGTCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACCAAC
U12 Branch Point Sequence:
GCACCACCAACC
Flanking Amino Acid:
NEWLSFMDAPAPAERYGFTL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.3
51.2
36.5
Major BPS
46.8
-0.2
1.1
52
30.4
Major PPT
46.5
-0.2
1.7
45.2
36.5
Minor 5ss
14.7
-4.1
3.8
24.3
37.3
Minor BPS
41.3
-0.6
2
48.53
40.1

Associated Gene:

Gene:
PPP1R3G
Ensembl Gene ID:
ENSAPLG00000024792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022049
69483880 - 69485424
1545