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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69492085_69504918_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
69492085 - 69504918
Intron Length:
12834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTGTTCCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.8
0.49
1
66.5
39.6
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
63.3
0.41
1.7
72.56
39.2

Associated Gene:

Gene:
RPP40
Ensembl Gene ID:
ENSAPLG00000005691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005897
69491957 - 69515083
23127