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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6949445_6949599_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6949445 - 6949599
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAA
5'SS Class:
major
3'SS Sequence:
GCTTCTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGCTTCTCATTT
Flanking Amino Acid:
NIPGLYIAVQAVLALAASWT
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
72.6
33.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.5
0.51
0.9
70.5
35.3
Minor 5ss
32.6
-2
2.9
39
46.4
Minor BPS
49.8
0.07
1.8
68.21
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004973
6937403 - 6962666
25264