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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6949708_6951067_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6949708 - 6951067
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TCCTCCCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCCTCCCACATA
Flanking Amino Acid:
GDGVTHVIPVAEGYVIGSCI
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
50
0
1.2
61.8
35.9
Major PPT
66.5
0.37
0.8
61.5
27.9
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
42.9
-0.5
2.3
54.96
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004973
6937403 - 6962666
25264