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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69505064_69506351_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69505064 - 69506351
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTCTGCTTTACT
Flanking Amino Acid:
HEFIDSFVKKGSCYALTYNT
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72
0.49
1.1
72
36.9
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
62.9
0.49
2.1
84.03
42.9

Associated Gene:

Gene:
RPP40
Ensembl Gene ID:
ENSAPLG00000005691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041690
69504721 - 69515045
10325
ENSAPLT00000005897
69491957 - 69515083
23127