Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69513543_69513890_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69513543 - 69513890

Intron Length:

348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTTAT

U12 Branch Point Sequence:

TTTCTGTTATTT

Flanking Amino Acid:

WLGAVLNQVNLDNKSSSFIS

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

79.2

33.9

Major BPS

0.47

1.2

61.1

45.5

Major PPT

100

1.12

0.4

100

Minor 5ss

40.9

-1

2.8

58.9

39.3

Minor BPS

49.6

0.05

2.2

76.56

40.7

Associated Gene:

Gene:

RPP40

Ensembl Gene ID:

ENSAPLG00000005691

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041690

69504721 - 69515045

10325

ENSAPLT00000005897

69491957 - 69515083

23127