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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69514026_69514846_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69514026 - 69514846
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATTGATAACC
Flanking Amino Acid:
DKIIQLLEQLCSYFSEPKLA
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
51.3
0.02
2.3
71.79
39.2

Associated Gene:

Gene:
RPP40
Ensembl Gene ID:
ENSAPLG00000005691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041690
69504721 - 69515045
10325
ENSAPLT00000005897
69491957 - 69515083
23127