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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6951975_6954705_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6951975 - 6954705
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTCTGTTTGATT
Flanking Amino Acid:
LGPEIFFHPEFANPDFMESI
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
75.4
0.57
0.9
67
43.8
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
60.3
0.4
1.8
78.04
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004973
6937403 - 6962666
25264