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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69545979_69556361_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69545979 - 69556361
Intron Length:
10383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
AACTATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGTTATTAATG
Flanking Amino Acid:
LPSVLYFLFSCTSTFMEALA
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.2
0.59
0.9
68.8
40.9
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
58.7
0.14
1.6
62.35
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005925
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033156
69536776 - 69638017
101242