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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69545979_69589140_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69545979 - 69589140
Intron Length:
43162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
AACTATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGTTATTAATG
Flanking Amino Acid:
IASALTINGKGTSTFMEALA
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.2
0.59
0.9
68.8
40.9
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
58.7
0.14
1.6
62.35
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005925
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006147
69536776 - 69638017
101242