About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69556407_69589140_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69556407 - 69589140
Intron Length:
32734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CGTTCTTTATCT
Flanking Amino Acid:
IASALTINGKASPCILPSVL
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.9
0.65
0.9
77.6
36.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
67.4
0.63
1.6
80.3
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005925
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033156
69536776 - 69638017
101242