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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6961980_6962570_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6961980 - 6962570
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TATATTTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTGTTTTATAT
Flanking Amino Acid:
WFGGSMLASTPEFFQVCHTK
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.4
0.62
0.8
72.8
37.1
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
54.6
0.22
1.8
76.11
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004973
6937403 - 6962666
25264