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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69672689_69687326_R

Intron Information:

Intron Rank:
151785
Intron Class:
major
Intron Phase:
Intron Coordinates:
69672689 - 69687326
Intron Length:
14638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTCTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.4
0.66
0.8
77.2
36.8
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
54.7
0.23
1.7
71.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029232
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018581
69672639 - 69715152
42514