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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69688116_69695419_R

Intron Information:

Intron Rank:
151786
Intron Class:
major
Intron Phase:
Intron Coordinates:
69688116 - 69695419
Intron Length:
7304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATATCT
5'SS Class:
major
3'SS Sequence:
TCCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TCCTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
73.1
31.7
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
86.5
0.82
0.7
82.5
26.2
Minor 5ss
35.2
-1.7
3.1
48.8
46.8
Minor BPS
56.4
0.19
1.7
65.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029232
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018581
69672639 - 69715152
42514