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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69695639_69715070_R

Intron Information:

Intron Rank:
151787
Intron Class:
major
Intron Phase:
Intron Coordinates:
69695639 - 69715070
Intron Length:
19432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86.9
0.83
0.6
81.5
30.6
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029232
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018581
69672639 - 69715152
42514