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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69846103_69855997_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69846103 - 69855997
Intron Length:
9895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTCTGGA
5'SS Class:
major
3'SS Sequence:
CACTTACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTTCCCACTT
Flanking Amino Acid:
IQEFTVDIKPRQAQAVCIPA
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
61.1
39.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
66.6
0.37
1
61.3
38.9
Minor 5ss
38.2
-1.3
3.1
49.4
46.8
Minor BPS
48.5
-0
2.1
76.34
40.7

Associated Gene:

Gene:
ECI2
Ensembl Gene ID:
ENSAPLG00000006010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006257
69845939 - 69869268
23330