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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69849187_69855997_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
69849187 - 69855997
Intron Length:
6811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATCTAG
5'SS Class:
major
3'SS Sequence:
CACTTACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTTCCCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
60.4
40.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
66.6
0.37
1
61.3
38.9
Minor 5ss
43.4
-0.7
2.9
52.4
45.8
Minor BPS
48.5
-0
2.1
76.34
40.7

Associated Gene:

Gene:
ECI2
Ensembl Gene ID:
ENSAPLG00000006010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028044
69848941 - 69869268
20328